Characterization and Similarity Analysis of DNA Sequences Considering Codon Degeneracy
نویسندگان
چکیده
منابع مشابه
Characterization and Similarity Analysis of DNA Sequences Considering Codon Degeneracy
We introduce a new 2D graphic representation of DNA sequences considering codon degeneracy. Derived from the graphic representation, a multi-component vector is proposed to characterize quantitatively DNA sequences. Then we use the graphic representation and the vector to perform the phylogenetic analysis on two datasets, the complete coding sequences of the -globin genes of 11 species and th...
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Motivation. Almost all methods for similarity analysis and phylogenetic inference are usually based on the multiple alignment of sequences or the invariants of sequences. But the former is not useful to all types of data, e.g. the whole genome comparisons, while the latter is accompanied by the complex calculation. The motivation of this paper is to introduce a new approach for similarity analy...
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ژورنال
عنوان ژورنال: International Journal of Hybrid Information Technology
سال: 2015
ISSN: 1738-9968
DOI: 10.14257/ijhit.2015.8.1.06